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Ian Blaby
… the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and … and Synthetic Biology JGI Co-chair, People Stewardship committee (2020-2022) UCLA Molecular Biology Institute …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … puts the spotlight on JGI’s DNA design and synthesis superpower. Through a series of case studies, JGI scientific … what they’ve discovered through their collaborations. One review article in the collection, Genomics-enabled analysis …
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JGI@25: Strengthening Soybean
… explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable properties as a … the JGI has also helped researchers understand a fungus that threatens these crops as they grow. Asian Soybean … ASR can decimate up to 60-90% of its yield.  (Learn more about the soybean genome sequence and ASR in this JGIota, a …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences … Tel Aviv and NCBI teams, who were already working on mining prokaryotic viruses together, learned from JGI’s Nikos …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel … sequenced the shrub willows through the  Community Science Program , using long-read sequencing to assemble the …
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Plant-Microbial Interactions Group
… detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … influence, and are influenced by microbial partners. We use a variety of genomics-powered tools to study this … (Tokyo University) Dongfong Wang (Spelman University, VFP Program) Emerald Nash (UC Merced Intern) Tyrome Sweet (UC …
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UC Merced Interns Reflect on Their JGI Summer Projects
… wide — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic information. Learn more about their work here in a series of videos produced by JGI … at the end of the summer. The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring …
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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently published in the  … Camille and Henry Dreyfus Foundation, and the JGI Synthesis Program under FP00005685. In addition, M.D. acknowledges …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors … Kaushal‘s mentor, described his student’s contributions as reviewing close to 3,800 metagenomes to verify geographic … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … scientists have identified at least 15 zealexins, they suspect there are even more to find. Zealexins are produced … of Science User Facility, through its  Community Science Program . And the work is part of a  larger CSP Functional …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most … of Energy Joint Genome Institute Community Sequencing Program (CSP 502951, 2016, Population and evolutionary …
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You Can Move, But You Can’t Hide
… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the … This work also received support from the Genomic Science Program in the U.S. Department of Energy, Office of Science, …
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