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Industry Engagement Program
… like the JGI, through its Genesis Mission. Launched in 2025, the initiative aims to accelerate scientific discovery, …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Fungal & Algal Program
… biocontrol agents dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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First Monoploid Reference Sequence of Sugarcane
… modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly complex given its estimated size of 10 billion bases (more than three times the size of the … The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more than …
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Trent Northen
… and starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An … through standardized fabricated ecosystems. Nature Methods (16), 567–571 (2019) doi: 10.1038/s41592-019-0465-0. … (AAAS), 2022&2023 Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director Exceptional Achievement …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … when we mapped the first sequenced RNA from the soil, only 10% of them were mapping to the fungal genomes at the JGI,” … tropics.”  Francis Martin will be a keynote speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Progress Reports: 2002–2020
… FY16 Progress Report … FY10 Progress Report … FY02–FY05 Progress Reports …
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Environmental Genomics Group
… With the development of high-throughput SIP (Nuccio et al. 2022) and terabase-scale metagenome combined assemblies (Hofmeyr et al. 2020) we are able to quantify isotope incorporation across a … genomes and other genomic elements (Vyshenska et al. 2023). … microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, T., Varghese, N., Roux, S. …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the … look at carbon storage, you’ll find that they contribute 10-15% of the carbon stored in coastal sediments,” said …
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Frequently Asked Questions: Proposal Submission
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