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Forest Fungi, Seagrass, and a New View of Symbiosis
… Three stories of JGI-supported research, connected to nutrient cycles. … Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao Ma. And Karen Serrano and Benjamin …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic … studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… JGI and the Workforce Development & Education department of Lawrence Berkeley National Laboratory (Berkeley Lab) … summer research collaborations through the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP … faculty members may invite up to two student participants from the faculty member’s home academic institution, one of …
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Introducing New Members of the JGI User Executive Committee
… JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced “you-wren”) of the University of Arizona! They join nine other JGI users …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … JGI staff. According to Axel Visel and Zhong Wang, founders of this internship program, this was the largest turnout for … began in 2014, pairs undergraduate and graduate students from UC Merced with at least one JGI mentor. Together, they …
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, Biotechnology, University of Tokyo … Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with … found informatics to be intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel …
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Exploring Polymorphisms Created by Transposable Elements
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Partnering with CalTeach – Training the Next Generation STEM Workforce
… to further develop a more diverse and inclusive pool of talent for career opportunities at JGI and Berkeley Lab. …
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Exploring the Diversity of the American Prairie’s Switchgrass
… A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, … as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious plan to begin to link the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … the JGI Metagenome Program, and coordinates the development of the virus and plasmid workflows for the National …
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Alabama A&M Interns Access An Abundance of Knowledge
… mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … is Dr. Yi Zhai, and I’m currently working on the effect of plant root exudates in the rhizosphere and microbiome. … The rhizosphere is the area surrounding the roots of a plant in the soil. And I’m specifically working with a …
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