Results
… Multi-species assays yield an unprecedented view of plant … and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like … of where those binding sites are in the genome — those sequences are moving around, disappearing and appearing in …
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… and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this …
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… is particularly interested in understanding how, when and why microbes decide to produce which metabolites. … S, Otani H, Udwary DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial RiPP biosyntheses. J Ind Microbiol … product galaxy. J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):273-279. Otani, H., Stogios, P.J, Xu, X., Nocek, …
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… gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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… “autopolyploids”, genome duplication occurs within a single species. By contrast, “allopolyploids” arise when different … and the oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.” In his words, the history of the strawberry is …
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… organisms who all consume different compounds. Microbial species will vary in activity as well; at any given time, … a Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the people …
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