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Discovery of enzymes for toluene synthesis from anoxic microbial communities
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… By leveraging metagenomics to sample the entirety of a microbial community out in its natural environment, … scientists have shown at least two microorganisms from different phyla are capable of methanogenesis. Using … by collecting samples from Yellowstone’s hot springs, an extreme environment with low genetic diversity that would …
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Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
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Seven genome sequences of airborne, bacterial isolates from Antarctica.
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The Busy World of Deep Sea Eruptions
… underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire ecosystems. Hear from researchers Anna-Louise Reysenbach, Emily St. John, … communities, and understanding how they’ve adapted to this extreme environment.   …
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A More Intuitive Phytozome Interface
… BioMart data warehouse interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …
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JGI Hosts GPU Hackathon in May
… the community. JGI is partnering with NVIDIA and Oak Ridge National Laboratory (ORNL) to make sure our computational … and the code owners will be able to get assistance from mentors and a team to port their code to a new … Oakridge National Laboratory Hackathon …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto … found informatics to be intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel …
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Microbial drivers of methane emissions from unrestored industrial salt ponds
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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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Microbial methane production from calcium carbonate at moderately alkaline pH
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