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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) … Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European Research Council …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … therefore hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the … environment and transfer that ability into industry, specifically to generate biofuels,” Hess said.  …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user facility. He … skills he had learned during his Navy career and in private industry translated to working in operations at a science …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal … of plant-host and mycorrhizal-fungal interactions. … The project was funded by the U.S. Department of Energy Joint … (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … connected with a wonderful person who’s a Co-PI on a JGI project Amy Schaefer . So we’ve been friends ever since. …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … for all this new cotton work, and even the original cotton project was to try to bring in molecular methods of breeding … fiber while reducing input costs. Growers, the textile industry, and consumers will derive benefit from this high …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative … of archaeal and bacterial type strains ( GEBA-type strains project ), the delineation of host-virus interactions, the …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … resources for genomic research and sequence-based science.  Projects include de novo generation of genome data, … Length of stay depends on the complexity of the project being considered and availability of data and other …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly … the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … levels go up and down. We're pretty early on in that project. I will fully admit that, but it's been fun, so far, …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is … the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … Practical Applications for Fungi Wint began working on the project that culminated in this publication during her …
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Graduate Students Get Thesis Research Opportunity at the JGI
… between 3-12 consecutive months. Their proposed research projects address scientific challenges central to Office of … Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … and this is a remarkable opportunity to launch a pilot project and begin the work of understanding how engineered …
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