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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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Genome-resolved correlation mapping links microbial community structure to metabolic interactions driving methane production from wastewater
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Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
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Non-photosynthetic lineages sibling to Cyanobacteria associate with eukaryotes in the open ocean
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Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … but computationally costly approaches such as BLAST and hidden Markov models (HMMs), “You just compute the distance … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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JGI Early Career Researchers Featured in mSystems Special Issue
… was applied to a recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. … specific metabolic processes. A third approach steps away from reconstructing genomes directly from the environment … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research …
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Rex Malmstrom
… that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale … A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.  PNAS 116 (41), … Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . 9 (1), …
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Digging into Microbial Ecosystems Deep Underground
… at Colorado State University have many questions about the microbial communities deep underground, and before the …
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Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago, Antarctica
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Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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