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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial … and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … . Working with  Synechocystis also opened up options for studying modified versions of this protein domain. In an …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has … the OGG. For a long time, C-fern has served as a model for studying ferns and for teaching plant biology. It is typical … over seven million repetitive elements that account for 85.2% of the C-fern assembly. While they did identify a couple …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… and replicating with their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then … User Facility, is supported under Contract No. DE-AC02-05CH11231. JRS is supported by the NASA Astrobiology …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … These days, Session is starting his lab at Binghamton “studying polyploids and transposon evolution, expanding on …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … the bark of oaks and threaten the health of the tree. While drought conditions may slow the progress of SOD, the …
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Graduate Students Get Thesis Research Opportunity at the JGI
… of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their thesis research at 12 host national laboratories or facilities between 3-12 … lab at the University of Texas-Austin. Rambo will be studying the influence of viruses on carbon cycling in …
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Enlarging Windows into Understanding Gene Functions
Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first … be used by itself, it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which …
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Triggering Morel Fruiting
… assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … an artificial environment. It is particularly helpful for studying physiological and biochemical processes driving the … China, and a wild black morel strain M. importuna CCBAS932 from the forests of France, were sequenced and annotated …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… of these varied biomes; the forests share only about 20% of their fungal species. To make useful comparisons, the … an investment portfolio. If a stress like wildfire or drought threatens some fungal species, other fungi will fill … Science Program proposal that Martin submitted in 2012. At that time, the field had surveyed many different …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… around, regardless of malfunction or misplacement.  In studying this family of ATs, researchers found that these … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified … species, each organism has a relatively small set of around 20 ATs. These ATs have maintained a small and relatively …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Basso. Shayna Bennett : So while here at the JGI, I’ve been studying mobile genetic elements and CRISPR spacers in the … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me … it’s great to see how far the field has come from the early 2000s. Josue Duque : One of the best parts about interning …
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Learning to Look
Waldo will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists … can help their host survive. “It is an exciting time to be studying filamentous phages!” said Krupovic. “We can now …
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