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Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
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A nucleoside signal generated by a fungal endophyte regulates host cell death and promotes root colonization
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Introducing New Members of the JGI User Executive Committee
… reasons for wanting to serve on the UEC. Hatzenpichler, who studies sediment-dwelling archaea, expressed his interest in … cellular phenotypes and genotypes. Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would … review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. Any investigator who has been …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… the first cross-kingdom spatially-resolved transcriptomics studies to date. This paper  is the cover article for the … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA … upregulated genes, 188 of which were shared with previous studies in the same system. With the right functional …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also contact us for additional details. … have a lot of well characterized genes. Other groups, like rusts, have maybe up to 70% uncharacterized. We are working …
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A Complex Confection Decoded: Sugarcane Reference Genome
… the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In … and other bioproducts. Finally, understanding how brown rust disease resistance works in sugarcane could help … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass
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The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… They hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the … M. polymorpha has been used as a model for evolutionary studies. Its place among early-diverging plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for …
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Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
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Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression
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