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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) … Institute in the UK — a nonprofit that was founded to help sequence the human genome. Today, the Sanger Institute …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have … Through the JGI’s Community Science Program , JGI sequenced and assembled near-complete genomes of P. hallii … soil water compared to the other plants. The team used QTL mapping to find the genomic regions that control gene …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … protein families had started to plateau in recent years, perhaps suggesting that scientists had “captured” much of the …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein … KNN-derived phase classifications can be seen on the tool, mapping out similar regions of tetranucleotide frequency. …
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ChIP-Seq identification of weakly conserved heart enhancers
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The Transcription/Migration Interface in Heart Precursors of Ciona intestinalis
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day … horizontally transferred — contributed to the ecological resistance of plants to the Earth’s ever-changing harsh … framework provided by these high quality reference genome sequences could help researchers better understand related …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for …   The Science Hydrothermal vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. … Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … with DOE mission-relevant projects that call for expansive sequencing, synthetic biology, and metabolomics capabilities …   Learn more about our individual calls and other opportunities to work with the JGI …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome … whole complex of progenitors and descendant species and, consequently, the evolution of polyploidy.” Evaluating …
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Genome interplay in the grain transcriptome of hexaploid bread wheat
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Ancient hybridizations among the ancestral genomes of bread wheat
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