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BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
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Protein structure determination using metagenome sequence data
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BAYESIAN SPATIAL-TEMPORAL MODELING OF ECOLOGICAL ZERO-INFLATED COUNT DATA.
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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A universal language for finding mass spectrometry data patterns
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JGI@25: From Life at the Extremes to Editing Genomes
… our collaborations and capabilities to enable great science that will help solve energy and environmental … of California (UC), Berkeley and Lawrence Berkeley National Laboratory – jointly the Nobel Prize in Chemistry … For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial and … the team. These strains have been characterized physiologically and enzymatically, with descriptions of how their …
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Tina Clarke
… (JGI). Tina serves in an HR advisory role to Division/Area management and supervisors to recommend solutions and … Lawrence Berkeley National Laboratory, Berkeley, CA/ Sr. Compensation Analyst … Institute (JGI) HR Partner, June 2017 – present Berkeley National Laboratory, Berkeley, CA, Sr. HR Division Partner …
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Ten Pressing Questions (and Answers) About Marine Fungi and Opportunities for Collaborations in the Ocean Sciences
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… bacteria function and colonize diverse environments. The Science Cyclic di-GMP (Guanine Monophosphate) is found in … bacteria live in complex and varied conditions. A molecule called cyclic di-GMP is a key player in the intracellular … within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a set of 92 …
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Mining Metagenomes for Cas Proteins
… proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature … mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. …
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Natural Prodcast Episode 23: Aaron Puri
… and explore the chemistry of quorum sensing systems, specifically the acyl homoserine lactones.  If you listened to … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to … project his name is Dale Pelletier and he’s from Oak Ridge National Lab . He’s an amazing microbiologist. And some of …
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