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Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that … approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & …
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Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis
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JGI on the 2021 Highly Cited Researchers List
Congratulations to the 2021 Highly Cited Researchers at the JGI! … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … multi-institutional research team that combined field data with a reference switchgrass genome to associate …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 … stress. The first year’s results will be compared to data from additional years of sampling, which are currently …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply … to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for …
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