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Targeted hypermutation of putative antigen sensors in multicellular bacteria
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Generation of Long Insert Pairs Using a Cre-LoxP Inverse PCR Approach
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Finding the Fermenters
… To better understand the range of bacteria and archaea that rely on this form of metabolism, researchers … community brings together the data resources enabled by the DOE Biological and Environmental Research (BER) … prokaryotes, including two bacteria isolated by their lab. KBase was used to rapidly assemble and …
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Nikos Kyrpides
… Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global metagenomics. … al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s biomes. Nature 4:1895-1906 Sberro H. … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … scientific knowledge, they are also equipping the next generation of scientists that will help shape all of our … . “After discussing the project with him, I was inspired by his enthusiasm and drive to give his students this …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads … discussions on how to capture and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore …
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Virus species names have been standardized; virus names remain unchanged
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