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Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
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Seven genome sequences of airborne, bacterial isolates from Antarctica.
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating … by HudsonAlpha scientists, with the help of funding from Mars Wrigley. The annotated genome has been updated to …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of them archaea. The …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … genome sequence of a mycorrhizal fungus shifted the focus from looking at single organisms to applying a broader … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, …
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Biodesign
… automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses generated from mining genomic data by designing and assembling … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. … that could be applied toward DOE-relevant bioenergy and environmental interests.  Summary As the planet has changed, …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … the zoospores were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both …
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Vision, challenges and opportunities for a Plant Cell Atlas
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CTCF-mediated functional chromatin interactome in pluripotent cells
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Assembling the Marine Metagenome, One Cell at a Time
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Diverse uncultivated ultra-small bacterial cells in groundwater
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