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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … their genomes were “remarkably” stable. “We thought we were sequencing the same genome multiple times,” Schmutz … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen
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Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be … to understand how the molecules in tiny microbes can impact whole ecosystems. Part of the reason he’s asking this … a steady state where we can keep improving it, but this rapid shift in population and the environmental implications …
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Cataloging the Microbes that Manage the Health of River Systems
… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Huntsville, Alabama and is known for her contributions to rapidly growing the economy of Rocket City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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Whisperings from not so silent mutations
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … “Now with these new tools — metatranscriptomics, RNA sequencing of soil RNA — we can access — ‘What are they … America, China, Europe and the United States.  “In the next few years, I think we will have a kind of global map of …
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nf-core/proteinfamilies: a scalable pipeline for the generation of protein families
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