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Overview of the Genomes OnLine Database (GOLD)
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Exploring the Diversity of the American Prairie’s Switchgrass
… the plant’s varying traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, …
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Mission
… Biological systems hold extraordinary potential to power innovation in energy, … and innovative materials production. Through collaboration with its users, the JGI provides genomic insights to improve … The following topics are not within scope:  Human health, pharmaceuticals, and cosmetics. …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although … of Science User Facility, has been developing and applying new genomics capabilities that address these issues. Check …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… what makes polar photosynthesizers tick. He’s working with researchers at the U.S. Department of Energy (DOE) … in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom Fragilariopsis cylindrus . … and his team then linked those species-level observations with data on microalgal communities across different ocean …
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Atif Shahab
… BS in Electrical Engineering, University of New South Wales, Australia; MS in Computer Science, University of New South Wales, Australia …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs … photosynthetic algae. But human-induced climate change , a new study suggests, is displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to …
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A Community Resource for Secondary Metabolite Researchers
… an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … experience in developing a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from … sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes …
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Pinning Down a Piece of Photosynthesis
… and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle … pin down.  Photosynthesis appears to have a lot in common with a Rube Goldberg machine: surprising dependencies, intricate …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… home office (garage). There, standing at a safe distance, with proper face covering, was JGI’s Administrative Services … Ray and it has been especially called on in the move to the new building where that was really critical. It takes a … years of his JGI/Berkeley Lab tenure, Ray kept the 50-year-old Walnut Creek functioning at a high level as JGI …
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Mining Metagenomes for Cas Proteins
… of California (UC), Berkeley, which is also affiliated with the Innovative Genomics Institute. The Impact The … from infecting viruses and phages. In the event of a new infection, the microbes use the genetic information … cas1 genes. Further analysis led to the identification of a new family of Cas proteins, named Cas14. Using these …
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