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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New … person at the Walnut Creek Marriott the week of September 30 – October 4, 2024.  … The U.S. Department of Energy Joint …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research enabled by the JGI … and synthesis work. This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look … work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal molecular mechanisms … by a DOE-Biological Environmental Research grant No FWP 61327 to FRC and PL (for RNAseq). The work at the Joint Genome …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of … how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … are often less diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage … Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural Sciences …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … also because they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related … China, and a wild black morel strain M. importuna CCBAS932 from the forests of France, were sequenced and annotated …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … play a critical role in the global carbon cycle, and are of significant interest for their potential contributions to … their research of these newly found methanogens  in diverse ecosystems with  support from a DOE Established Program to …
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene … … PhD in Chemistry, Johns Hopkins University (2003) MS in Chemistry, Johns Hopkins University (2000) BS in … (1996) … List available on Google Scholar … Education … Publications …
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner A, … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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