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Special Initiatives & Programs
… support for DOE-BER funded awards, including awards funded through  BER Funding Opportunity Announcements ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is …
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … Parkinson from Purdue University. She’s in the Department of Chemistry and the Department of Medicinal Chemistry and … is a really great question. I think that there is diffusion through the soil-- DAN: Sure. BETSY PARKINSON: --but I think …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … Wint’s other mentor and head of the JGI Fungal and Algal Program. Paying It Forward Wint, originally from …
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High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … Roux is also one of the lead organizers of the Viral EcoGenomics & Applications (VEGA) Symposium , which will …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by …
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Strain Engineering
The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae previously with little to no genetic tools enabling … The developed strains represent an additional phase of user-accessible project types, in which DNA-based …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … provides a foundational data set that is now available through a new  single-cell data viewer that was … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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