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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Understanding Wildfire Recovery, Starting in Soil
… return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By … published in Nature Microbiology , went a step further, using both DNA and messenger RNA (mRNA) sequencing to … harbored fungal genomes, including a novel Leotiomycetes species and Coniochaeata lignaria , and both DNA and RNA …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network … to assemble, for the first time these large environmental  microbial data sets for JGI users, which include projects … looking at wildfire impacts, carbon cycling, and the microbial dynamics in freshwater lakes over a several year …
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Evolution and comparative genomics of the most common Trichoderma species
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … elements based upon their gene content and their genetic sequences. Roux was first author on a study featuring a new …
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Protein structure determination using metagenome sequence data
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SpaRC: scalable sequence clustering using Apache Spark
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Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT), and emendation of the species Turneriella parva
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JGI on the 2021 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … a series of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was …
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