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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … ecosystem. Microbiome 11, 237 Roux et al., 2023. iPHoP: An integrated machine learning framework to maximize host … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis.
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High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats
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The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst … Huber and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life Sequencing call …
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Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems
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Polar Phytoplankton Need Zinc to Cope with the Cold
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
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Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter▿ †
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Jane Grimwood Named HudsonAlpha Genomics Chair
City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … and biology of human chromosome 19 The DNA sequence and comparative analysis of human chromosome 5 The sequence and …
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JGI Early Career Researchers Featured in mSystems Special Issue
… article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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The Capsella rubella genome and the genomic consequences of rapid mating system evolution
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