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… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … included how to use deep learning to predict protein function (Héctor García Martin of Berkeley Lab’s Biological … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… Trained on environmental data, a new JGI tool more accurately … foundation models. However, the sheer vastness of microbial diversity is not covered by reference genomes.”  Most of the … new discoveries in microbial genome structures and functions. Wang worked with the MetaHipMer team with …

… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome … the team concluded, “we provide a global analysis of the diversity, distribution, and evolution of virophages.” Lead …

… Understanding the shared genetic toolkit of ancestral and present-day … They hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the … of plants.  Pangenomes encompass a plant’s genetic diversity beyond a single reference genome, which is key to …

… A new approach for improving functional annotation in fungal genomes. The Science In a … far-flung species would speed up efforts to harness species diversity in traits relevant to U.S. Department of Energy … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …