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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and … samples around the world, resulting in a five-fold increase of RNA virus diversity. “The world of viruses around us … analyses – as best we could, we tried to describe the protein domains every virus carries, and who is their likely …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley … on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the potential of this collaboration stating, “We … Computing Center, the Molecular Foundry and the Advanced Light Source, future collaborative research projects were …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity At first … notable because bacteria aren’t usually visible without the assistance of microscope. “It’s 5,000 times bigger than most … technique known as BONCAT to identify areas involved in protein-making activities, that confirmed that the entire …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences … factors that control how genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The … after she left the JGI. “Biotin DAP-seq is a unique quick protein purification approach,” O’Malley said. “It provides …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and … participants. One is a fungus (usually belonging to the ascomycetes, one of the two main branches of fungi); another … model global carbon and nitrogen cycling. Summary To shed light on lichen, an international team led by Daniele …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused … Distinguished Fellow where he identified a novel apolipoprotein (ApoA5) involved in human and mouse triglyceride … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global … around two varieties: 95 percent of what is grown is known as Upland cotton ( Gossypium hirsutum ), while the remaining … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to JGI …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of … sequencing technologies and computational methods in the past decade, researchers have uncovered genomes for just a … the roles of microorganisms in regulating nutrient cycles, as well as gaining insights into potential applications they …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from … biochemicals and other bioenergy solutions.  The program has been a pioneering effort in functional genomics since … (gRNA-SeqRET) was developed by the JGI as a tool for extracting specific sequence regions in a high throughput manner …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … sequence. At the time, the vital global source of both protein and oil was also the largest plant project completed …
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Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.
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