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Understanding Wildfire Recovery, Starting in Soil
… The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … and Coniochaeata lignaria , and both DNA and RNA viruses. One trait that stood out in both bacteria and fungi …
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Simon Roux
… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of viral ecogenomics. For this role, Dr. … Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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Building Sphagnum Genomic Resources
… model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … permafrost from the warming regional temperatures. For this reason, the U.S. Department of Energy is overseeing … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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Common Ancestry and Novel Genetic Traits of Francisella novicida-Like Isolates from North America and Australia as Revealed by Comparative Genomic Analyses
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Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
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On the origin of bird’s nest fungi: Phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota)
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Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. citricarpa based on phylogenomic analyses
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Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi
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Scaling Up Existing Skill Sets
… paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields … before. Seeing the breadth of interesting work being done at the JGI has really motivated me to think outside of … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with …
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … potential waiting to be unearthed in sequencing and analyzing uncultivated microbes. Summary The CRISPR-Cas …
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … Explorer ( GitHub ) with a series of large datasets. One test was to predict traits of more than 400 cultured …
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