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2022 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The … researchers to solve the world’s evolving energy and environmental challenges.   Mission  The mission of the JGI …
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A One-Stop Shop for Analyzing Algal Genomes
… to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … of its kind, with an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 … They play key roles in global carbon cycling, are sources of natural products, and have potential as biofuel …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel teamed with University of … staff, Mouncey explained: “One of the hallmarks of JGI is our diverse workforce and our diverse collaborators around …
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Building Sphagnum Genomic Resources
… insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused …
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A Grass Model to Help Improve Giant Miscanthus
… insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … team. The work was a joint effort led by scientists at the  Center for Advanced Bioenergy and … to novel traits.  M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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From Competition to Cooperation
… symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of mutualistic forest-dwelling fungi … Datasets … From our partners …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… (MBIB) Division, and Energy Storage & Distributed Resources Division at Berkeley Lab.  Building on the momentum … challenges.”  During the workshop UDE and Berkeley Lab scientists discussed a diverse range of topics related to … single cell and systems biology, omics, and big data science, machine learning for experimental science, energy …
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Uncovering Novel Genomes from Earth’s Microbiomes
… work results from a collaboration involving more than 200 scientists, researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional collaborative knowledge …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Making a Lichen Together
… and alga to understand their partnership more clearly. The Science The humble lichen is a superorganism: one being that … or together, on nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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David Goodstein
… basal metazoans and plants. Working with a talented team of scientists and software engineers, Dr. Goodstein currently … for the JGI's direct collaborators and the wider plant science community. Dr. Goodstein’s group also develops and … 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … and first author of the article. The research team included scientists at the University of California (UC), Berkeley, …
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