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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with …
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A More Intuitive Phytozome Interface
… backend data systems. Trying to maintain v12’s codebase and legacy data resources and hardware, while also developing a modern and … 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Enrichment of root-associated Streptomyces strains in response to drought is driven by diverse functional traits and does not predict beneficial effects on plant growth
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Ian Blaby
… oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. al., Genome‐wide … and overlap with other stress transcriptomes. The Plant Journal . 84: 5, 974-988. 2015 Zones et. al., High-resolution …
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JGI@25: Stories from Intern Alumni
… revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science … wet lab experiments, to computational modeling and virtual projects, hear intern alumni Candace Cole, Alessandro … share how these experiences have influenced their career journeys.     …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… in some cases daily, check-ins with their mentors to ensure projects progressed despite the challenges of remote work. … with the UC Merced students is a fantastic component of our work,” said Nigel Mouncey, JGI Director. “This year is …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … a part of the students’ thesis,” she says. “Second, we want our students to gain the opportunity to see what research is …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Picking Up Threads of Cotton Genomics
… underscores its value and importance in the fabric of our lives. In the United States, cotton production centers … including researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … added. “We must be careful who we ask to take on these projects due to their difficulty and complexity, but we have …
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JGI-UC Merced Interns Share Their 2021 Experiences
… virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate …
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A Grass Model to Help Improve Giant Miscanthus
… and Bioproducts Innovation (CABBI), a Department of Energy (DOE) Bioenergy Research Center, along with researchers from … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets … discoveries to develop new varieties of Miscanthus as a source of renewable bioenergy. …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… For bacteria, that salty, slightly stinky air is a rich source of the sulfur they need to grow and divide. Similar to … and they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … done the synthesis, metagenome mining, all the way from sequencing to functional characterization, and a project …
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