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Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
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Phenotypic and genomic signatures of interspecies cooperation and conflict in naturally occurring isolates of a model plant symbiont
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Synthesis
… assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint … cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome … starchless mutant. The Plant Cell . 25: 11, 4305-4323. 2013 Blaby et. al., Experimental evolution of a facultative …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … targets of hypermutation in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum …
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The Expanding Universe of Methane Metabolisms in Archaea
… metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to develop … a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation Process (WIP) …
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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Methane Cycling Microbial Community Characteristics: Comparing Natural, Actively Extracted, Restored and Unrestored Boreal Peatlands
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Rex Malmstrom
Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … sorting slow-growing archaeal− bacterial consortia. PNAS 113 (28), E4069-E4078 Bendall, M.L. et al. 2016. Genome-wide …
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