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… at Colorado State University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers … hills, and it has legacy mining that goes back more than 100 years. And in particular, there’s an inflow from the … you know, within my lifetime, we should hit around nine or 10, which is thought to be where we’re going to level off. …

… the microbiology of watershed systems, they utilized over 160 river water samples collected through WHONDRS, a … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing … also provided several access points for these datasets. As part of a larger microbiome data integration hub, these …

… and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for … be able to learn how to do. Ravikiran Madichetty : The best part of interning at JGI for me has been definitely the … strong career as well. Morgan Lavenstein Bendall : The best part about interning here is that I get to meet a lot of …

… are potential biofuel feedstocks of interest to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to M.O.). Support was also provided by the National Natural Science Foundation of China (31590821, 31561123001, …

… fellow Vincent Wu worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … tree of life, enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was … the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous …

Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of … information,” Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the … Ul-Hasan’s thesis is on cone snails, C. californicus in particular, as a model system for venom-microbe …

… relationship between poplar trees and their microbial partners. The Science To help better understand how … samples studied by researchers came from two environments: natural forests and plantations managed through human … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …

Those from the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor … looked to the evolutionary history of strawberries as part of a study to develop a method for identifying …

… but not all plants and fungi can form such symbiotic partnerships. To learn more about these other plant-fungal … toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled … culture collection consisting of fungal species from natural Arabidopsis populations around Europe. The JGI …

… as identification of target genes of transcription factors, particularly sigma factors that initiate transcription in … sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As …

… an elephant for the first time. Based on the single body part each blind man touches – a tusk, the ear, or the tail – … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked … U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 …