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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and … in microbiome data science. … National Energy Research Scientific Computing Center … DOE System Biology Knowledgebase … …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … can adapt to future environmental conditions. Additionally, insights from the genome could help scale sustainable … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and https://doi.org/10.46936/10.25585/60001194) …
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Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
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Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions
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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
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Decoding Yellowstone’s Microbial Mats
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JGI at the AGU Fall Meeting
Maximize Your Research by Harnessing Multiple Scientific User Facilities in One Proposal via FICUS December 13 … Restoration on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O … context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST …
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JGI Scientists Pen Genome Watch Articles
Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … microbiome  by its genomes and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Examples: Successful LOIs & Submissions
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Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism
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Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
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Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis
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