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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their … ever-changing environments better? We could unlock new innovations to drive more productive food, medicine, and … crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change …
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Marine Microbe Contains Multitudes
… Pacific Subtropical Gyre, microbes tend to stay localized at different depths. But SAR324 can be found throughout the … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ecologically distinct clusters, or ecotypes. These ecotypes fall into two main groups: two ecotypes dwell in the sunlit …
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Pinning Down a Piece of Photosynthesis
… are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food webs as they … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … said Crysten Blaby-Haas, a research scientist at the JGI and Molecular Foundry, and the study’s senior author. In …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… in early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University … planet Mars. To help determine where Marsarchaeota might fall amidst other known archaeal lineages, the team relied …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … gathered for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, …
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A Grass Model to Help Improve Giant Miscanthus
… multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … grass’ efficient perennial life cycle. For example, in the fall the plants store nitrogen in its rhizomes – in the form …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … field. Roux will be recognized at the 2025 ASM Microbe Meeting in Los Angeles, Calif.  Roux is also one of the lead …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and … Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of … emphasis on bacteria and archaea, and including those associated with microeukaryotes. The program also studies giant …
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Metagenome Program
… technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, … archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring … the Program aims to unlock the fundamental principles that govern ecosystem processes. This research provides …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted … The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , along with Jenny Mortimer, … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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