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Frederik Schulz
… eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) … and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the …
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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Model Fern Reveals Insight into DNA Thievery in Ferns
… more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long history of dynamic evolution … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as …
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Science Programs
… The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the … develop cutting-edge approaches for and with users, and create computational tools and resources for them. Their …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… in Mexico. While conducting early field studies related to her thesis on cone snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management … her thoughts about the experience below. In the summer of 2018, Jonathan Benskin was preparing to teach a second year … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry … is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization …
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Genome sequence of the Trifolium rueppellianum - nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012
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