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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.   … microbes cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … to an all-time high. California homeowners witnessed how their once stout oaks, the anchors of their properties , …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … and this [project] wouldn’t have been possible without their involvement; it’s something we wouldn’t have even …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable …
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Frederik Schulz
Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is … discovery pipeline and enrichment metagenomics for terrestrial protists. These approaches enable novel …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … the mysteries concealed within the “dark” functional realm. Their focus sharpened on deciphering the intricate world of … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of … tobacco. Olpidium itself doesn’t cause much damage to the hosts, but they are carriers of several viruses (e.g., … paper was able to resolve the latter question, despite of their well-designed sampling and analysis of their data at …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and … 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … influence viral-host interactions in three groups: cyanophages, bacteriophages, and giant algal viruses.  The …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest …
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