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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
In order to do so, these organisms share space at cellular scale: fungi stretch a network of tendrils called … Berkeley National Laboratory (Berkeley Lab). Specific understanding of this symbiosis could offer improvements in … from both plant cells and fungal cells. “Because this technology relies on just polyadenylated transcript capture …
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JGI@25: The Little Alga That Could
… and environmental challenges. Chlamydomonas is a single-celled alga with a unique place in evolutionary history. … Retaining ancestral features of both plant and animal cells, it shares nearly 7,000 genes with other organisms (a … Merchant would go on to work on research that identified signaling pathways in Chlamydomonas.   So, Merchant was …
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How Filamentous Fungi Sense Food
… decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … Filamentous fungi are also being used in the biotechnology industry to produce enzymes, proteins, and other … funds from the Fred E. Dickinson Chair of Wood Science and Technology to N.L.G.. V.W.W. was partially supported by …
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Bacterial Genome Annotation
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A bacterial toolkit for plants
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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Improving genome assemblies by sequencing PCR products with PacBio
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Improving Microbial Genome Annotations in an Integrated Database Context
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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
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acCRISPR: an activity-correction method for improving the accuracy of CRISPR screens
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial sciences …
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JGI@25: Solving the Mystery of the Missing Oil
To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based array … at Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab collaborations. The JGI’s single cell genomics expertise led to the identification of a new …
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