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DAS Tool for Genome Reconstruction from Metagenomes
… and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … Program (ETOP) , researchers have developed and improved upon a tool that combines existing DNA sequence binning … and characterizing entire microbial genomes from sequences generated from environmental samples. The work aligns with …
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Persistence and plasticity in bacterial gene regulation
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A renaissance for the pioneering 16S rRNA gene
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Community-wide plasmid gene mobilization and selection
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Licence to knockdown — the phage gene silencer
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Team Science Reveals Important Protein in Poplar
… molecules that combat infections. When the  PtrbHLH011 gene was knocked out in poplar, those plants produced double … Institute (JBEI.) The JGI team measured the levels of gene expression in the engineered plants while a Molecular … and cell wall structure in the poplar plants with help from scientists at the NSLS-II.  These findings lay the …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … in the Synthetic Biology special issue, Modular cell-free expression plasmids to accelerate biological design in cells … fostering academia-industry collaborations.” A third story from the issue — Machine learning-based prediction of …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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JGI@25: Stories from Intern Alumni
… 2022 marks the JGI’s 25th anniversary . Over the next few months, we’ll be revisiting a number of notable achievements … that showcase our collaborations and capabilities to enable great science that will help solve energy and … Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field …
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Benjamin Cole
… interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his … their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … List of pubs available on NCBI …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  … than 5,000 data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The … In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model … lineages makes it ideal for comparative genomics studies, offering insight into genes critical for roles including …
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