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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill Fenical from Scripps … why it’s so hard to succeed, and we talk about an ongoing project I’ve been working with him on as an exploration into … In this episode, Natural Prodcast talks to the legendary Prof William Fenical of Scripps Institution of Oceanography in …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … with Marnix on putting that stuff together. It’s been kind of a theme, I think, in the last couple of conversations … of North America. So then I came back and I worked on an EU project, the Scottish Association for Marine Science. And …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a …
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Boosting Small Molecule Production in Super “Soup”
… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … into a cell-free system. The work complements efforts to further develop sustainable alternative approaches for … for pathways of varying complexity. Rasor cautioned that further optimization is needed to scale up for commercial …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish … studying the microbial communities in Antarctic lakes, some of which have salinities 10 times that of seawater. To shed … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from … In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every part of this project depends on lakewater …
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Introducing New Members of the JGI User Executive Committee
… JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced … in extending its activity-based cell sorting pipelines to further the link between cellular phenotypes and genotypes. …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … glasses, or a cane, but only Waldo will have all of these features. As described July 22, 2019, in  Nature … , a team led by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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Boosting Small Molecule Production in Super “Soup”
… Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … into a cell-free system. The work complements efforts to further develop sustainable alternative approaches for … for pathways of varying complexity. Rasor cautioned that further optimization is needed to scale up for commercial …
Learn more
The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The … and female sexes. For the first time, the sex chromosomes of shrub willow have been sequenced with sufficient … This work was supported by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to …
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