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Gut Fungi: Unexpected Source of Novel Chemicals
… in their hunt for anaerobic fungi. By growing extracts without oxygen in ruminant fluid — which smells terrible … into expected proteins. That work was done in collaboration with the Environmental Molecular Sciences Laboratory (EMSL), … than one DOE Office of Science National User Facilities , with the stroke of a single proposal. The next step for the …
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The Power of One, Amplified
… cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with respect to the amount of within species recombination, indicating variation in gene …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) Carefully … and ensure your idea is aligned Discuss your proposal idea with JGI staff to clarify key points about JGI’s … submitting a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will …
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Tracing the Evolution of Shiitake Mushrooms
… sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes … more genetic diversity in wild Lentinula species compared with farmed cultivars, highlighting a potential conservation …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… in 1990 when the U.S. Department of Energy (DOE) partnered with the National Institutes of Health. The DOE works with the National Nuclear Security Administration to … involved in repair of DNA damage, and those associated with atherosclerosis and diabetes mellitus. Los Alamos …
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10 From JGI on the 2019 Highly Cited Researchers List
… of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, … over the last year: Kerrie Barry and Jeremy Schmutz worked with a community of switchgrass researchers to conduct a …
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JGI@25: Using Team Science to Build Communities Around Data
… together over 400 proposal collaborators and co-authors with affiliations at over 180 organizations in 29 U.S. … 85 proposal collaborators, 58 had never shared a proposal with each other prior to their involvement with the 1KFG project. Over 1,000 species have been …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … when switchgrass (and by extension similar taxa) are faced with pronounced environmental fluctuations. New findings from this line of research combined with past insights will allow the identification of …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi … and trees to grow. However, fire changes the microbes within the soil. To get a clearer picture of how burned … a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study sheds …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… began to offer a window into viral existence. Along with highlighting the viruses in a given sample, … and grades their quality based on completeness. Along with expanding the viral diversity that IMG/VR features, … viruses could play a role. “If you want to do anything with a microbiome — you know, target specific microbes or …
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Tracking the Origins of Methane-Producing Microbes
… of them archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the … (ETOP). Following that work, they partnered once more with JGI Microbial Program head Tanja Woyke and her Single … said study first author Bojk Berghuis. “This provided us with genetic evidence to tie together the evolutionary …
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