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High‐Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping‐by‐Sequencing
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across … their synthesis. The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics … bioactive secondary metabolite compounds. To support users, our efforts include developing computational tools …
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Kinetic variation in grass phosphoenolpyruvate carboxylases provides opportunity to enhance C4 photosynthetic efficiency
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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An efficient cre‐based workflow for genomic integration and expression of large biosynthetic pathways in Eubacterium limosum
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
Ancient  Chloroflexota s ditched their flagella and other traits when migrating back to the ocean. The Science … A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  … small, it’s possible flagella would be a liability in open water — requiring more energy for the bacteria to orient and …
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