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JGI Announces 2025 New Investigator Portfolio
… and environmental DNA sequencing to explore microbial and plant interactions across unique ecosystems, …
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iPHoP: A Matchmaker for Phages and their Hosts
… processes like  carbon fixation , nitrogen cycling and methane production. Meanwhile, environmental viruses are … opens the possibility of using phages to engineer microbial communities. One day, these phages could boost …
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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Hiroshi Otani
… H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 … the natural product galaxy. J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):273-279.   Otani, H., Stogios, P.J, Xu, X., …
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Rex Malmstrom
… that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale … mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct lineage of giant viruses brings a rhodopsin … PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of soil microbiomes using …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… functions. It plays an important role in regulating microbial cellulose production and biofilm formation, which … work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic di-GMP controls microbial … work was enabled in part by a proposal to the DNA Synthesis CSP call , and the results are described in ACS Chemical …
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Jeremy Schmutz
… Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies …
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JGI & KBase at PAG XXVII
… Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE … in  Setaria  and a Novel Gene for Shattering   In mid-2019, JGI and KBase will be co-located at Berkeley Lab’s …
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Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia
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Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … they belong. This study provides further insights into the microbial involvement in carbon and nitrogen cycling and … in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous oxide). Summary To do this work, the …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … of Science User Facility. Y. lipolytica is a tantalizing microbial factory, capable of turning abundant biomass … This work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …
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