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… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 … and genome version you’re after.  You can even grab genomes based on which version of Phytozome (e.g., 9, 10, …

… Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around …

… Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function … a subscriber? Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …

… Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate …

… Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will … Miscanthus breeding programs. The team also sequenced genomes of numerous wild Miscanthus lineages to better …

… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The …

… versions appear side-by-side below: Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship …

… I recently caught up with Karolina at the Plant and Animal Genomes, or PAG conference, when in-person meetings were … that water through the whole plant system, they need to open these pores in their leaves called stomata. And through … stomata is really important. And when those stomata are open, it’s the same pore in the leaf through which carbon …

… people and transparency and a staunch supporter of open source development processes. This expresses itself in the open approach JGI compute infrastructure is managed, through …

… microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome … as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host … the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, 578-585. Roux et al., …

… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … From these assemblies, complete or near-complete population genomes were recovered—termed “metagenome-assembled genomes” …