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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … Genomics proposal calls, projects can request up to 50 polar and 150 nonpolar metabolomics analyses. For the … the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A Method for Metabolite …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  How … deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) … involves PCR amplification of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth required). Methylation …
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Trent Northen
… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Swift CL, et al. Anaerobic gut fungi are an untapped reservoir of natural products. …
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Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation
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A Grass Model to Help Improve Giant Miscanthus
… into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the … to extreme environments such as poor soils and drought. The reference genome for M. sinensis, and the associated genomic … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will …
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Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
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The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi
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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
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A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
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Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi
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Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses
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Comparative mitogenomics of kingdom Fungi – evolutionary insights and metagenomic applications
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