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The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Continental Hydrothermal Systems
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Yasuo Yoshikuni
… the power of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and … At the JGI, Dr. Yoshikuni also manages the Synthetic Biology Pathway Engineering group. His research focus … startup, Bio Architecture Lab, Inc. (BAL), where he used systems and synthetic biology to discover novel pathways …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… Yoshikuni and his team  announced in  Nature Microbiology an important addition to the synthetic biologist’s … technique CRAGE lands the cover of ACS Synthetic Biology. (Wayne Keefe/Berkeley Lab) For example, the JGI … JGI users led by Steven Hallam at the University of British Columbia, recently deployed CRAGE to rapidly label  E. coli  …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… and clouds of insects hover just above. Described as a “river of grass” that stretches some 580,000 square miles … across southern Florida, they encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. … Laboratory (Berkeley Lab), embarked on a pilot project with biology students from Boca Raton Community High School in …
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems      
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Model Fern Reveals Insight into DNA Thievery in Ferns
… grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, land plant evolution. Recent … has been studied in plant research laboratories and plant biology courses across the globe for insights into reproductive, space and genome biology . The undeniable power of plants, and the lessons …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals highlight … that live on Alaska’s glacially dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, such as the Copper River Delta wetland pond, cycle carbon. Using plots at the …
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