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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these … Berkeley National Laboratory, is committed to advancing genomics in support of DOE Office of Science Biological and …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … aimed specifically at “Gene function” and “Functional genomics.” We will keep updating the Gene Atlas with curated …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint …
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An Integrated Dataset to Understand Ecosystem Interaction
… managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … the trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were … ( https://ror.org/05cwx3318 ) is supported by the Genomic Science Program in the U.S. Department of Energy, …
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Single Cell Research Group
… focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … Chris Rinke: Research Officer, Australian Centre for Ecogenomics Patrick Schwientek: Cofounder & CTO, Oralta … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …
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IMG/M: integrated genome and metagenome comparative data analysis system
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Ian Blaby
… analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral … CRISPR-Cas9 systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput platform at the Joint …
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Picking Up Threads of Cotton Genomics
… and increasing the efficacy with which we use natural resources for provisioning society.”   Genome-wide gene … from this high impact science for years to come,” said Don Jones, who handles variety improvement for  Cotton … selective in choosing which team to financially support, Jones added. “We must be careful who we ask to take on these …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… ferns’ secondary metabolites and associated genes are great resources for bioremediation, new agricultural applications …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Graduate Students Get Thesis Research Opportunity at the JGI
… is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s … with JGI and LBNL scientists and have access to unique lab resources. Berkeley Lab is the home to an exceptional … into their new shared home, the Integrative Genomics Building at Berkeley Lab. …
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JGI announces final round of 2022 Functional Genomics awardees
… the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the …
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