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Ian Blaby
… bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, … Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – University of Florida; … CRISPR-Cas9 systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput platform at the Joint …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… with a short lifecycle that uses a carbon fixation process known as the C4 pathway, which particularly helps plants … Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on … with a reasonably accessible system,” said Schmutz. “Building the pan-genome and accessions allow us to see …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of environmental … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … complete viral genomes. That study multiplied the number of known viral genes by a factor of 16. The same year, the JGI …
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Virus-associated organosulfur metabolism in human and environmental systems
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IMG/M: a data management and analysis system for metagenomes
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A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
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What Happens Underground Influences Global Nutrient Cycles
… alga  Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues have generated a … mutant library in Chlamy, as the alga is colloquially known by researchers. A missing gene from this mutant …  under PNNL’s Soil Microbiome SFA, which aims for a systems-level understanding of the soil microbiome and its …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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Crowdsourcing and curation: perspectives from biology and natural language processing
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