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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted … by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns Tahirah Williams and mentors Igor … colonization by resident phages of a plant growth promoting bacterium. And my mentor is Dr. Jonelle Basso. Shayna …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, … proteins — and its role in photosynthesis — in the cyanobacterium  Synechocystis . Through an array of experiments … produces this domain as a stand-alone protein, the cyanobacterium  Synechocystis . Working with  Synechocystis also …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as … on Carbon Flux and Future Directions The team reported producing BDO at the rate of 0.9 grams per Liter-hour in a …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … Methanogenic microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest … which direction the enzyme these genes encode are used — so producing methane or consuming methane, those are already …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the past decade, researchers have uncovered genomes for …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls … NASA Exobiology.  … Volland et al. 2022. A centimeter-long bacterium with DNA contained in metabolically active, …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. … at academic level in a few years as it’s getting closer to producing trillion base data sets on daily basis.” As part …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … the crop as a versatile candidate biomass feedstock for producing sustainable alternative fuels. Common Gardens Are …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … of the Soil Microbiome  Science Focus Area (SFA), is producing hundreds of stable isotope probing genome-resolved …
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