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Research in the Analysis R&D group focuses on developing new bioinformatics solutions to support … and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … and external scientists, the Wang group has developed customized data analyses and software to enable “grand-scale” …

Using a novel computational approach, researchers confirm microbial … genes from isolates, there isn’t much scientists can tell about its function or its origin. As a result, these genes … and graph clustering able to run in such highly parallel infrastructures.”  This is the first time protein structures …

Virophages are small viruses with double-stranded DNA genomes that co-infect … a cysteine protease involved in capsid maturation. Recently reported in  Microbiome , researchers from the US Department … high quality virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 …

… all that it has contributed, and what they’re excited about in JGI’s future. Find recordings and recaps of these … to be junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many … of a genomic arms race as they recognized the private industry’s interest in simultaneously sequencing the human …

… health. Three DOE national labs had people and resources focused on three human chromosomes: Lawrence Berkeley National … researchers were studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked … Laboratory had teams studying Chromosome 19, which contains about 2% of the human genome. They were interested in genes …

Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, … and in flowering plant lineages.   With the information about  Marchantia -specific innovations and adaptations, …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … Watch the short video here to see what they had to say about their experiences and what they’ll take with them as … Cassol, Jeff Froula & Ed Kirton Project: “ Streamlining computational studies of misfolding proteins via high …

The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of … of the University of Arizona! They join nine other JGI users already serving on the UEC – go here to view the full … and can serve no more than two consecutive terms. In late 2021, the JGI launched a solicitation for nominations for …

Several sessions will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes …

… for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two … meetings were still a thing, i.e. in January. She talked about her  Community Science Project proposal with JGI, in … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …

… publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using samples from common gardens growing across the … involved researchers at the University of Texas at Austin, HudsonAlpha, and the JGI. Building off this work, …

Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley lab. She earned her PhD in … of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in … Niyogi KK, Schmutz J, Theg SM, Blaby-Haas CE, Merchant SS. (2021) Widespread polycistronic gene expression in green …