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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar … with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many samples are … and data analyses capabilities available on a peer-reviewed competitive basis via its  User Programs . Q:  Are …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… changing planet. In this short audio production, we’ll hear from Ed Hall, an ecologist at Colorado State University in … the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a …
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Pinning Down a Piece of Photosynthesis
… light microscope, and fickle, often hiding their function from even the most determined scientist.  Recent work in  … an array of experiments at universities and national user facilities, researchers found that this protein detects … we were able to work with on this project to ask questions about structure and function,” Blaby-Haas said.  Looking at …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant … and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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JGI Launches Latest Strategic Plan
… sequence to the public data repositories over its now 20-plus-year history. In 2019, the countdown has begun to the … in the heart of the Lab’s 200-acre campus—with the big move from leased space in Walnut Creek, Calif. scheduled to begin … prospective partners to generate awareness of and clarity about the JGI’s strategic directions,” said Mouncey. “In …
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …
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JGI@25: Stories from Intern Alumni
… . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our collaborations and … science that will help solve energy and environmental challenges. Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field …
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Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the team says the …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a … scientists have shown at least two microorganisms from different phyla are capable of methanogenesis. Using … Alternate Metabolic Pathways And there is something special about these new lineages recently tied to methanogenesis. …
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JGI Scientists Pen Genome Watch Articles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … .  The latest article, published January 27, is about engineering plants and their microbiomes for more … leads the  Microbial Program at the JGI, received a message from Andrea Du Toit, senior editor for  Nature Reviews …
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How to Target a Microbial Needle within a Community Haystack
… the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led … targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … traditional shotgun metagenomics approach to learning more about environmental samples starts with researchers first …
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