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… specific conditions – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication … It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, … a subscriber? Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …

The JGI leverages its existing partnerships and develops others … with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the … expand data functionality. Close partnerships with other user facilities enable the ability to leverage their …

Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, …

… ultimate achievement. To get to this point requires rigorous research, written skill, above all else, determination. … Grigoriev at the JGI strongly influenced her perspective about what it means to be a scientist. “To see how team … — I’m always glad to pay it forward,” said Wint, now in her final year of PhD research at UC Merced. She plans to …

… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. … for all protein-coding genes belonging to each genome. The final dataset – available to the research community on an …

… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … and metabolites associated with the tree’s stress response. Finally, using transcriptomics, researchers were able to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the … the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan … without such a serendipitous partnership. The class decided to do an environmental microbial community …

Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … Grass Brachypodium distachyon.  Nature. 463: 763-768 … 2018-present Member, EcoFAB steering committee 2014-present …

As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …

Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory … of simplified soil communities with high and low carbon use efficiency across differing moisture treatments … …

… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …

… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental … researchers have been able to gain further insights about how microbes have adapted to thrive in polar …