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2022 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence … and environmental challenges.   Mission  The mission of the JGI is to provide the global research community with access …
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FICUS Overview
… and streamlines this process, but enables scientists to conduct fundamental science experiments in ways they couldn’t … be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides …
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Len Pennacchio
… at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from … … The Deputy of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data … Enhancers VISTA Cardiac Enhancer Browser ENCODE FaceBase … 2021-  NLM Board of Regents Working Group on “NIH …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … call is for expansive projects that leverage a range of JGI capabilities, and also requires a Letter of Intent. The New Investigator call is for PIs who have never led a JGI project, and the Functional Genomics call is for …
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Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment
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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established … 2018 Senior Editor: Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP … for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … …
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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FICUS-NERSC/KBASE
… jointly support these missions, and to expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather …
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JGI-KBase Panel at SACNAS
… contribution they make, whether as part of a course or internship, and before ever publishing a research article. … National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their … research experience and how students were able to use these experiences to get credit for their scientific contributions …
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