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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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JGI Announces 2026 New Investigator Portfolio
… Pictured from left: [Top row]: Emily G. Aguirre, Shauna M. Bennett, … Gonzalez Henao, Yang Hai, Julia G. Harenčár, Sarah Hu; [Row 3]: Lisa Kappel, Gayan Kariyawasam; Ákos T. Kovács. Elina … including metagenomics, metatranscriptomics and genome assembly to investigate microbial and plant …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close … (Try it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change … as hurricanes and droughts. Another one began in late 2013, when a large patch of warm ocean water about a third the … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Supporting Global Research into Actinomycetes
… a scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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Novel bacterial clade reveals origin of form I Rubisco
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Streamlining Regulon Identification in Bacteria
… in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … the third is determining the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given … 18, with the number of factor-gene pairs almost doubling to 399. Two of the 11 sigma factors addressed in the study were …
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Three Join the JGI User Executive Committee
… and help develop programs to increase participation from minority-serving institutions in JGI user programs. The … Greenham stepped down at the end of her term. In late 2023, the JGI launched a solicitation for nominations for …
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Introducing New Members of the JGI User Executive Committee
… other scientific organizations. Fungal biologist Stajich from UC Riverside sees the JGI’s open application process for … late 2022 and the election period concluded on Jan. 6, 2023. With the election, the following UEC members stepped down …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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