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Marianne Buscaglia
… in cold marine environments and is interested in analyzing genes that can impact the metabolism of their hosts. …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe … they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Kanwar Singh
Kanwar spends part of his time assisting JGI users by processing their single …
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SIPs with Standards
… are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. But there's a … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to …
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JGI-USCCN Strain Sequencing Opportunity
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Ben Bowen
… impactful scientific discoveries, supporting the DOE’s Biological and Environmental Research user community … bioenergy and environmental objectives. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. …
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Back in the Lab: the 2023 Summer Intern Experience
… in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave … in not only their work, but the opportunity to collaborate with and learn from fellow researchers onsite as well. …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates …
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and proteomics data. …
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Filling in the Plant Tree of Life
… food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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From Textbook to Real World Applications
When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in learning more about the principles of synthetic biology, Robert Evans and Jan-Fang Cheng in the …
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