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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … next 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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What Happens To a Rainforest When You Dial Up Drought?
Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the atmosphere. This episode, researchers take a look at …
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Crops as Tough as World Cup Turf
Torrres have looked into traits that could transfer from grasses into other crops.  One grass they studied just …
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Forest Fungi, Seagrass, and a New View of Symbiosis
Three stories of JGI-supported research, connected to nutrient cycles. … Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao Ma. And Karen Serrano and Benjamin …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic … studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
JGI and the Workforce Development & Education department of Lawrence Berkeley National Laboratory (Berkeley Lab) … summer research collaborations through the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP … faculty members may invite up to two student participants from the faculty member’s home academic institution, one of …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … JGI staff. According to Axel Visel and Zhong Wang, founders of this internship program, this was the largest turnout for … began in 2014, pairs undergraduate and graduate students from UC Merced with at least one JGI mentor. Together, they …
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Introducing New Members of the JGI User Executive Committee
JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced “you-wren”) of the University of Arizona! They join nine other JGI users …
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … which metabolites. … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with … found informatics to be intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel …
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Exploring Polymorphisms Created by Transposable Elements
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